Services & Capabilities
Flexible engagement models across computational analysis, workflow engineering, and scientific software development. Built for reproducibility, transparency, and acceleration of biological insight.
From Raw Reads to Results
Hand off your FASTQ, BAM, or count matrices. We run the full analysis — QC through publication-ready figures — and return documented, reproducible outputs you can build on.
- QC, trimming, alignment / pseudo-alignment
- Differential expression (counts normalization)
- Pathway / enrichment analysis
- Publication-ready figures
- Filtering, normalization, clustering
- Marker gene identification
- Trajectory / pseudotime (optional)
- Cell type annotation framework
- Taxonomic profiling
- Diversity metrics & ordination
- Differential abundance
- Pathway inference (optional)
- Alignment & variant calling
- Annotation (SNVs / Indels)
- Variant prioritization
- Summary reports
- Peak calling & QC
- Differential accessibility / binding
- Motif enrichment
- Integration with RNA-seq
- Bisulfite alignment & calling
- Differential methylation
- Integration with expression
- Region annotation
Don't see your assay? We regularly work with emerging and custom protocols. Get in touch →
Built to Run Again
Modular, version-controlled workflows designed to scale from a single sample to thousands — without rework.
- Snakemake / Nextflow / CWL
- Docker / Singularity environments
- Parameter schema & validation
- Automated testing hooks
- Legacy bash → modular framework
- Runtime & cost optimization
- Logging & audit trails
- Artifact version tracking
- AWS Batch / Lambda / Step Functions
- Spot cost strategies
- Secure data staging
- CI/CD integration
Data, Made Accessible
Secure portals, APIs, and automation that connect your analysis outputs to the people who need them.
- Secure auth & roles
- Interactive visualization
- Audit logging
- Export functions
- REST / GraphQL endpoints
- Structured data access
- Token-based authorization
- Documentation bundles
- CLI & desktop tools
- ETL pre-processing
- Results packaging
- Report automation
Strategic Guidance or Integrated Capacity
Not every engagement needs a full project. Sometimes you need an architecture review, a second opinion on a workflow, or a bioinformatics partner embedded in your team for a quarter.
- Workflow design assessments
- Scalability & reliability
- Security posture checks
- Gap remediation plan
- Runtime profiling
- Cost reduction tactics
- Resource scaling
- Benchmark comparisons
- Fractional bioinformatics engineer
- Mentoring & enablement
- Backlog execution
- On-call advisory
Have a dataset or workflow in mind?
Share a brief outline — response typically within one business day.